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Optimization and characterization of polyhydroxybutyrate produced by Halomonas meridiana using orange peel waste
BMC Microbiology volume 25, Article number: 304 (2025)
Abstract
The production of bioplastics from marine microorganisms is significantly relevant in the field of biotechnological applications for sustainable ecological management. Nevertheless, the expense associated with PHB production is substantial and regarded as the primary obstacle to its industrialization. In this study, orange peel waste served as a carbon source to enhance PHB production efficiency. Among the 15 strains evaluated, MH 96 was selected for PHB production due to its high salt tolerance and efficient utilization of orange peel as a substrate. The highest producing PHB strain MH96 was genetically identified using 16S rRNA sequencing as Halomonas meridiana and submitted in the GenBank under accession numbers PP826284. The optimal fermentation conditions were evaluated through single-factor optimization. Upon completion of the response surface optimization, the Plackett–Burman and Box-Behnken design experiments were conducted utilizing the outcomes of the single-factor optimization. The final parameters were the inoculum size of 1.74, (NH4)2HPO4 concentration of 1.0 and pH 6.37, and PHB yield of 5.94 g/L. The characterization of the extracted biopolymer by NMR, FTIR, XRD, and thermal properties was used to examine the properties of the extracted PHB, and gas chromatography-mass spectrometry (GC–MS) proves the presence of 2-butenoic acid, 1-methyl ethyl ester, tetradecane, hexadecanoic acid, methyl ester, and docosanoic acid, 8,9,13-trihydroxy-. Methyl ester, which confirmed the structure of the polymer as PHB.
Introduction
The widespread production of synthetic plastics, coupled with existing legislative frameworks, has intensified the quest for bio-based and biodegradable polymers. Among these, polyhydroxyalkanoates (PHAs) are notable biodegradable polyesters synthesized intracellular by various microorganisms [1]. These biopolymers typically manifest as storage granules within microbial species, accumulating when there is an imbalance in nutrient levels, thereby serving as energy reserves and a survival strategy for the microorganisms.
PHAs can be categorized based on the number of carbon atoms in their hydroxyalkanoate monomers: short-chain length (scl-PHAs, C1-C5), medium-chain length (mcl-PHAs, C6-C14), and long-chain length (lcl-PHAs, > C14). The physicochemical properties of these polymers are influenced by their composition; scl-PHAs exhibit properties akin to polyethylene (PE) and polypropylene (PP), while mcl-PHAs share characteristics with rubber and elastomers [1, 2].
PHAs are a better alternative to bioplastic than petroleum-based polymers [3]. The biocompatibility and biodegradability of PHAs bioplastics enable a range of uses in both agriculture and medicine [4]. Poly (3-hydroxybutyrate) (PHB) is a biopolymer synthesized through microbial cultivation, requiring efficient microorganisms and cost-effective substrates. The moderately halophilic bacterium Halomonas boliviensis LC1 has demonstrated high PHB production efficiency, utilizing leftover quinoa (Chenopodium quinoa Willd) as a substrate [5].
Halophiles possess the remarkable ability to thrive in high-salinity environments where most other organisms would not survive. Among these halophilic species, certain actinomycetes, cyanobacteria, and yeast are known to produce polyhydroxybutyrate (PHB), a biopolymer that can serve as a substitute for synthetic polymers in various commercial applications [6].
Previous study has examined the presence of PHB derivatives in ten strains of the genus Streptomyces within the actinomycetes group. Nevertheless, there remains a limited body of literature focused on using actinobacteria to synthesize PHB [7]. Numerous investigations have looked into the possibility of genetically modifying halotolerant bacterial strains to increase their capacity to produce PHA [8], and using them in industrial biotechnology [9].
These results in the cost-effectiveness of the substrates employed as the carbon source in PHA production. Thus, the most crucial strategy for reducing production costs is to use cheap raw materials [10]. For this reason, to make biopolymer-producing microorganisms financially viable, it is preferred to culture them using inexpensive raw resources, such as agricultural and agro-industrial residues [11].
Orange peel waste represents a valuable nutrient source for bacteria that produce PHB [12], due to its composition, which includes soluble and insoluble carbohydrates and a relatively low protein content [13]. This results in a favorable carbon-to-nitrogen ratio. Additionally, with an estimated global production of 10 million tons annually, orange peel waste constitutes the primary byproduct of the citrus processing industry [14, 15]. Furthermore, PHA production can be improved by optimizing procedure factors utilizing a variety of tools for optimization [16].
Previous research has utilized the Response Surface Methodology (RSM) to enhance the production rate of PHAs by various bacteria, including Rhodobacter sphaeroides, Bacillus coagulans, and Ralstonia eutropha. Utilization is readily available; the current increase in Gram-positive bacteria stains has been promoted by low-cost substrates. in optimizing bacterial requirements for optimal PHA production [17]. By screening and examining the interactions between the parameters, a factorial design employing RSM is utilized to show the cumulative effect of the factors. Regarding low-cost carbon sources, statistical optimization approaches remain a crucial tactic for achieving an ideal PHA concentration immediately before large-scale manufacturing [18].
The aim of this study is to enhance the production efficiency of polyhydroxybutyrate (PHB), a bioplastic, from marine microorganisms using orange peel waste as a sustainable carbon source. The study focuses on isolating and identifying high PHB-producing strains, optimizing fermentation conditions through single-factor and response surface methodologies, and characterizing the extracted biopolymer to confirm its structural and thermal properties. The ultimate goal is to reduce the production costs associated with PHB and overcome the barriers to its industrialization, thereby contributing to sustainable ecological management through biotechnological applications.
Materials and methods
Isolation sources and medium
Water and soil samples were collected from the Max salt pans in Alexandria, Egypt, using a TYS medium with the following composition (g/L): NaCl 75, KCl 0.7, CaCl2·2H2O 1.4, MgSO4·7H2O 6.8, MgCl2·6H2O 5.4, NaHCO3 0.2, yeast extract 0.5, and peptone 1. Sucrose was added as the sole carbon source at 20 g/L, and the pH was adjusted to 7.0 using 1 N HCl and 1 N NaOH [19].
Screening tests for PHB -producing isolates
To screen for PHB -producing bacteria, a solid medium was supplemented with 0.5 µg/mL of Nile Red. A sterilized viable colony staining technique was applied to Petri dishes. After three days of incubation at 37 °C, the isolates were streaked onto agar plates and examined under UV light, with positive colonies identified by fluorescence [20]. The cultures were maintained at a pH of 7.0 on nutrient agar plates at 37 °C for one day to preserve PHB -producing bacteria. A confirmation test for PHB production was conducted using Sudan Black-B (SBB) stain [21]. A subset of isolates was cultivated in TYS medium supplemented with 2% sucrose, incubated at 37 °C and 150 rpm for 72 h, after which polymer measurements were taken following extraction [22].
Identification of the most potent bacterial isolation
Biochemical and morphological characteristics
To identify the most potent isolation MH 96, the morphological (shape, Gram reaction) were examined.
16S rRNA sequencing and phylogenetic analysis
Genomic DNA was isolated from the overnight culture of chosen isolates using a Qiagen DNA purification kit, according to the manufacturer's guidelines (Qiagen, Hilden, Germany). PCR amplification of 16S rRNA was conducted using genomic DNA from the isolates as a template. Two primers were utilized: 8 F (5'-AGAGTTTGATCCTGGCTCAG-3') and 1495 R (5'-CTACGGCTACCTTGTTACGA-3'), along with GoTaq Flexi DNA Polymerase (Promega, WI, USA), following the protocol established by [23]. The resulting sequences were edited and shortened using BioEdit version 7.2.5. Subsequently, these modified sequences were aligned with those in the GenBank database through BLAST analysis. A phylogenetic tree was constructed based on the 16S rRNA sequences using the UPGMA method. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates). The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Maximum Composite Likelihood method [24, 25].
Factors affecting PHB production (single factor optimization).
This experiment examined the effects of salinity, nitrogen supply concentration, orange peel concentration, and peptone and yeast extract concentration to improve the culture medium. Table 1 enumerates the particulars of the various sets. After fermentation, the bacteria were examined to determine the PHB yield, and the DCW and PHB After yields were utilized to determine the optimal single-factor conditions. The investigation also examined the impacts of temperature, starting pH, agitation speed, incubation duration, and inoculum size to optimize fermentation conditions [26, 27].
Optimization of PHB using Plakett–Burman (PB) design
To identify significant factors influencing PHB production, a Plackett–Burman (PB) experimental design was employed [28, 29]. As shown in Table 2, eleven variables related to medium composition and culture conditions were examined at low (− 1) and high (+ 1) levels. This two-level factorial design allows for the investigation of 12 variables (n + 1) [30], and to minimize errors, three replicated center points were included. The anticipated response (Y) can be modeled as:
Y is the anticipated response, β0 is the model intercept, βi denotes the linear coefficient, and Xi indicates the levels of the independent variables. PHB production was measured in triplicate, and the response was calculated as the average of these values. Variables with significant effects at the 95% confidence level (p < 0.05) were identified for further optimization.
Response surface methodology
To assess process stability and variability, a second-order response surface was created using a Box-Behnken design (BBD), which included three factors, three levels, and three replicates at the center point [31]. The selection of center points followed the Plackett–Burman design framework. Table 3 outlines the three levels: high (+ 1), middle (0), and low (− 1). The data obtained were analyzed using regression analysis with the"Design Expert"software (Version 7.0). The accuracy of the polynomial model was evaluated using the coefficient of determination (R2). Each experimental trial was conducted in triplicate. The second-order polynomial regression model can be represented as follows:
In this equation xi and xj are the coded independent variables, Y is the expected response, β0 is the intercept, βi is the linear coefficient, βij represents the interactive coefficients, βii denotes the quadratic coefficients, and ∑ accounts for the error term.
Characterization of PHB synthesis by the most potent bacterial isolate
Gas chromatography-mass spectrometry (GC–MS) detection
Research at the National Research Center in Dokki, Egypt, employed a direct capillary column (30 m long, 0.25 µm thick, 25 mm internal diameter) with a Trace GC1310-ISQ mass spectrometer [32]. For analysis, air-dried biomass or pure PHB was placed in a glass tube with 1 ml of chloroform, 850 μl of methanol, and 150 μl of H2SO4. The tube was sealed and hydrolyzed at 100 °C for 160 min. After hydrolysis, an equal volume of water was added, and the mixture was stirred. A 2 μl sample was taken from the bottom layer for injection, using benzoic acid as an internal standard. In this study, PHB identification was confirmed by analyzing GC–MS results and comparing them with previously published data that used standard PHB as a reference for spectral analysis. The similarity in characteristic peaks between our samples and the standard PHB validates the polymer's identity [33].
Fourier transform infrared chromatography analysis (FTIR)
FTIR spectroscopy was used to analyze the functional groups in the isolated PHB at the National Research Center. The biopolymer was dissolved in chloroform and mixed with potassium bromide (KBr) pellets, with the solvent removed afterward. Infrared spectra were recorded using an FTIR/4 Jascoo across a wave number range of 400 to 4000 cm⁻.1 [34]. In this study, PHB identification was confirmed by analyzing FTIR results and comparing them with previously published data. The methodology followed that of [35], where standard PHB was used as a reference for spectral analysis. The similarity in characteristic absorption peaks between our samples and the standard PHB supports the polymer identity [35]
Nuclear magnetic resonance analysis (NMR)
Twenty-five milligrams of dried PHB samples were dissolved in 100 μL of deuterochloroform (CDCl₃), and the chemical structure was analyzed using both 1H and 13C NMR on a 500 MHz spectrometer [34].
X-ray diffraction analysis (XRD)
Purified PHB samples were compressed onto a glass slide for XRD analysis. The measurements were taken using a Bruker D8 Advance diffractometer with a copper source at 40 mA and 40 kV, over a 2θ range of 5º−80º with a step size of 0.05º[36]. In this study, PHB identification was confirmed by analyzing XRD results and comparing them with previously published data. Penkhrue et al. (2020), where standard PHB was used as a reference for spectral analysis [35]
Thermogravimetry analysis (TGA)
A 5 mg sample was analyzed using the Themsys One Plus SETARAM under a nitrogen atmosphere, with a flow rate of 20 mL/min and a heating rate of 10 °C/min. Thermogravimetric analysis (TGA) and differential thermogravimetry (DTG) were performed to evaluate the polymer's thermal stability and degradation temperature [37].
Differential scanning calorimetry) DSC)
DSC analyses were conducted on all polymer samples under nitrogen to determine glass transition (Tg) and melting temperature (Tm). The procedure included three temperature cycles: heating from room temperature to 250 °C, cooling to −50 °C, and reheating back to 250 °C, with specified heating and cooling rates [35].
Analytical methods
Determination of cell dry weight
The optical density at 600 nm was measured using a spectrophotometer (M-ETKAL-721) to evaluate cell growth. Following a five-minute centrifugation at 10,000 rpm and 4 °C, the cell pellet was washed with distilled water. To ensure constant weight, the pellet was dried overnight at 105 °C. A standard calibration curve correlating OD600 with cell dry weight was used to ascertain cell mass concentration. [20].
Determination amount of PHB
The extraction of PHB from bacteria involved centrifuging the samples at 10,000 rpm for 10 min to collect the bacterial cells after incubation. The resulting pellet was treated with a 4% sodium hypochlorite solution and incubated at 37 °C for one hour, followed by a 15-min centrifugation at 5000 rpm. After washing with distilled water and cleaning with acetone, the pellet was dissolved in 5 ml of boiling chloroform, which was allowed to evaporate [38]. The extracted PHB was then analyzed spectrophotometrically by adding 10 ml of concentrated H₂SO₄ to the chloroform solution, sealing it, and heating it for 10 min. After cooling, the solution was analyzed using a UV spectrophotometer at 235 nm, with a standard curve created for PHB concentrations between 0.5 and 3.5 mg/ml.
Statistical analysis
All experiments were conducted in triplicate, with means and standard deviations reported. A stepwise regression approach was used to formulate an optimal model, and ANOVA was applied to analyze the main effects of the fitting model, defining significance as P < 0.05. Data analysis was performed using Design Expert 7.0 and Excel 365.
Results and discussion
Isolation and screening of PHB -producers from different sources
As described in the materials and methods, PHB -producing bacterial isolates were obtained using enrichment media supplemented with glucose. Samples were collected from various liquid and solid sources across different locations in Egypt. A total of 15 bacterial isolates were isolated and analyzed. Qualitative screening for PHB production was conducted using the Nile red staining assay, revealing that one bacterial isolate MH46 exhibited significant accumulation for PHB but other isolates showed weak production.
Another qualitative screening for PHB production using Sudan Black B staining method to assess their PHB production. Dark, blue-colored colonies that produced PHB were regarded as promising candidates for the synthesis of PHB. Results revealed that bacterial isolate MH96 was the most potent for PHB production. To confirm the qualitative results, quantitative screening was carried out on all bacterial isolates to quantify PHBTo extract PHB, the cells were subsequently collected, and evaluated, and the PHB content was compared. Table (4) reveals that bacterial isolate MH 96 produced PHB 0.49 g/L, when using sucrose as a carbon source while this isolated produced PHB with1.0 g/Lin the case of oeange peel as substrate. Cost-effective manufacturing necessitates the availability of inexpensive renewable sources for carbon feedstock and bacterial strains capable of generating substantial quantities of intracellular PHB utilizing these economical substrates. These wastes are abundantly accessible and provide substantial sources of carbohydrates generated by the agricultural industry. The six most potent halo-bacteria isolates selected were cultivated in a TYS medium containing 10% sodium chloride and glucose. Consequently, the isolate MH 96 was employed as the most effective halo-bacterium for production and optimization. These wastes are abundantly accessible and serve as substantial sources of carbohydrates generated by the agricultural sector. Consequently, the isolate MH 96 was employed as the most effective halo-bacterium for production and optimization. These wastes are abundantly accessible and serve as substantial sources of carbohydrates generated by the agricultural sector.
The production of PHB by bacteria from waste has been previously reported. For instance, the newly isolated Bacillus flexus strain AZU-A2 was used for the production and optimization of polyhydroxyalkanoates using sugarcane molasses as a cost-effective substrate [20]. Additionally, [39] described the production and optimization of polyhydroxylic acids using glycerol as a substrate with the newly isolated Zobellella taiwanensis Azu-IN1 strain at 37 °C and 1% (v/v) glycerol. Furthermore, Halomonas alkaliantarctica was reported to produce PHB using dairy waste as a substrate [40].
Identification of the most potent bacterial isolate MH 96
Morphological and biochemical characteristics
The leather-producing enterprise generated soil from which MH 96 was extracted. MH 96 was identified by examining the isolates'morphology (Gram reaction, shape), biochemistry, and additional features. The strain MH 46 is rod-shaped, Gram-negative, has positive catalase activity (Fig. 1) and has a negative KOH reaction. It can flourish with up to 10% sodium chloride or elevated salinity.
Molecular identification and phylogenetic analysis
The 16 S rRNA gene of the bacterium MH 96 was amplified and sequenced, enabling molecular identification. Following purification, sequencing, and alignment, blast analysis was used to compare the amplified PCR products to published sequences of 16 S rRNA gene strains kept in NCBI databases. The isolate with more than 99% similarity in its blast findings led to its identification as Halomonas meridiana. With accession code PP826284, the capacity of the genus Halomonas to synthesize PHB from various carbon sources is recognized [41, 42], (Fig. 2) shows its phylogenetic tree.
Optimization of PHB production using the one-factor-at-a-time (OFAT) Approach
Halomonas sp. can synthesize polyhydroxyalkanoates (PHB) without requiring nitrogen sources, magnesium ions, sulfate ions, or other additional components, as long as a sufficient carbon supply is available [43]&[42]. In this study, single-factor optimization experiments were conducted to evaluate the effects of (NH₄)₂HPO₄ concentration, orange peel concentration, and nitrogen source type on the production of polyhydroxybutyrate (PHB) by strain MH 96 (Fig. 3). As shown in Fig. 3A, strain MH 96 was cultivated in TYS medium at 37 °C and pH 7.0, with initial orange peel concentrations ranging from 100 to 1000 g/L. The dry cell weight (DCW) increased at 100 g/L and 700 g/L, reaching a maximum at 700 g/L, where PHB production peaked at 0.95 g/L with a recovery yield of 30.57%. However, at 1000 g/L, a slight decline in DCW was observed, suggesting that 700 g/L is the optimal concentration for PHB fermentation, though the relatively low overall productivity indicates room for further optimization.
Influence of medium constituents on PHB production by strain MH 96. A. Influence of orange peel concentration on PHB yield. B. Influence of nitrogen source type on PHB yield. C. Influence of peptone and yeast extract concentration on PHB yield. Each value is mean of 3 replicates ± standard error of means. Different lower-case-letters in the same bars are significantly different by post hoc-Tukey’s Honestly Significant Difference test (HSD) at p ≤ 0.05, values of the same bars with the same letters are not significantly different
The impact of diverse organic and inorganic nitrogen sources on growth and PHB synthesis was evaluated, as illustrated in Fig. 3B and C. Cell growth increased with fermentation duration, reaching a peak of 3.16 g/L at 96 h with ammonium phosphate. While similar DCW (range from 2.81 to 3.16 g/L) was achieved with alternative nitrogen sources, the maximum recovery yield of 31.96% (w/w) was attained with ammonium phosphate. The maximum PHB achieved was 1.01 g/L, with a recovery yield of 31.96. An ideal concentration of 1.5 g/L was identified for maximizing PHB production efficiency.
Experiments were undertaken to optimize temperature, agitation rate, pH, sodium chloride concentration, inoculum size, and fermentation length to further study the impact of fermentation conditions on PHB formation by strain MH 96. The findings are illustrated in Fig. 4. Strains were cultivated for different durations (12 to 96 h) at 150 rpm and 37 °C, as illustrated in Fig. 4A. The buildup of growth-associated PHB in strain MH 96 was seen during the exponential development phase (Fig. 4A). The highest PH PHB A production of 0.887 g/L and maximum DCW of 2.95 g/L were achieved at 96 h, with a recovery yield of 30.07% (w/w). Consequently, an incubation period of 96 h was selected as the optimal duration for subsequent investigations.
Effect of various factors on PHB production by strain MH 96. (A) Fermentation duration. (B) Inoculum size. (C) pH. (D) Sodium chloride concentration. (E) Temperature. (F) Agitation rate and inoculum size. Each value represents the mean of three replicates ± standard error of the mean. Different lowercase letters within the same bars indicate significant differences according to Tukey’s Honestly Significant Difference (HSD) test (p ≤ 0.05), whereas bars with the same letters are not significantly different
As indicated in Fig. 4B, a correlation was observed between increasing DCW and PHB generation as inoculum size concentration increased for strain MH 96. The highest DCW of 3.2 g/L and PHB production of 1.14 g/L were recorded at 96 h, with a maximum recovery yield of 35.62% (w/w). PHB accumulation and recovery yield decreased slightly at inoculum concentrations above and below this threshold, with the optimal yield achieved at 4% inoculum size.
Figure 4C illustrates that DCW remained relatively stable across a broad pH range (6.0 to 10.0), varying from 3.04 to 3.40 g/L after 96 h. At an initial pH of 5, DCW dropped to 2.43 g/L, indicating a significant decline. However, PHB production and recovery yield increased significantly with a rise in initial pH, peaking at pH 7, where 1.25 g/L and 36.76% (w/w) were recorded.
Figure 4D illustrates that strain MH 96 yielded the highest dry cell weight (DCW) of 3.34 g/L and polyhydroxyalkanoates (PHB) of 1.28 g/L at a sodium chloride concentration of 12.5% after 96 h of post-inoculation. This scenario resulted in a maximal recovery of 38.32% (w/w). Additionally, PHB accumulation and recovery yield exhibited a modest decline at sodium chloride concentrations both below and beyond this ideal threshold.
Figure 4E illustrates that strain MH 46 attained a dry cell weight (DCW) of 3.34 g/L after 96 h at 37 °C, yielding the highest PHB recovery rate of 38.32% (w/w) and a PHB production of 1.28 g/L. This result is consistent with the findings of Desouky, Abdel-Rahman [20] and Abdel-Rahman, Desouky [39] which reported that all optimized agents were prepared at 37 °C. Consequently, the ideal incubation temperature for maximizing PHA generation efficiency was determined. Ultimately, as illustrated in Fig. 4F, following 96 h at an agitation rate of 150 rpm, the maximum dry cell weight (DCW) of 3.34 g/L and polyhydroxyalkanoate (PHA) concentration of 1.28 g/L were achieved. This result is consistent with the findings of Desouky, Abdel-Rahman [20], which highlight the importance of stirring for effective mixing and mass and heat transfer. The effect of varying agitation rates (0.0 [fixed], 50, 150, 200, and 250 rpm) on the growth and PHA production of strain AZU-A2 was investigated. The highest dry cell weight (DCW) of 4.39 g/L and the maximum PHA concentration of 3.0 g/L were observed after 24 h at an agitation rate of 200 rpm.
Results of response surface optimization utilizing PBD and BBD
Conventional optimization techniques are frequently laborious, susceptible to inaccuracies, and fail to enable the concurrent examination of several interacting variables [43]; nevertheless, data-driven treatment methodologies can be developed through statistical design. The product yield can be enhanced by optimizing the fermentation process. Multiple applications have been submitted for the statistical optimization of biological processes utilizing PBD and RSM [44]. Reports indicate that PHA yield optimization can be achieved by the RSM optimization technique [45] &[43]. This study employed PBD and BBD in multifactorial interaction experiments to determine the optimal fermentation conditions.
Results of PBD experiments
Fifty trials were conducted to evaluate eleven media components for their effects on PHB production. Trial eleven yielded the highest PHB, while trial four yielded the least (Table 5). Statistical analysis showed that inoculum size, (NH4) kHPO4 concentration, and initial pH were the most influential factors. ANOVA results for the Plackett–Burman design indicated a first-order model's determinant coefficient (R2) of 0.9998, with a significant F-value of 773.2, suggesting a 0.13% chance that this result is due to noise (Table 6). Additionally, a curvature F-value of 1131.76 pointed to substantial curvature in the design space, with only a 0.09% likelihood of being attributed to noise. Stepwise regression analysis was conducted using Design Expert 7.0, leading to the formulation of the following predictive equation for PHB yield (Y):
Response surface methodology
According to the results above, PHB production was greatly impacted by three important factors: inoculum size, (NH4)2HPO4, and initial pH. These factors were further analyzed using Box-Behnken Design (BBD), as detailed in (Table 7). The resulting second-order polynomial equation is expressed as:
where A, B, and C represent the concentrations of inoculum size, (NH4)2HPO4, and initial pH, respectively, while Y corresponds to PHB production (g/L). The coefficients indicate the influence of linear, interactive, and quadratic terms on PHB yield. ANOVA analysis alongside F-tests was employed to evaluate the statistical significance of the model (Table 8).
The model demonstrated a high degree of reliability, with an R2 value of 0.9959, suggesting that it accounts for 99% of the variability in the response (Fig. 5). The significance of the model is supported by an F-value of 187.93, with only a 0.01% likelihood that such an F-value could arise from noise. Model terms with"Prob > F"values below 0.0500, including AB, AC, BC, A2, B2, and C2, were identified as significant.
For strain, MH 96, which utilizes orange peel as a carbon source for PHB synthesis, the optimal parameters identified through Design Expert 7.0 software were the final revision is inoculum size 1.74, (NH4)2HPO4 concentration 1.0 and pH 6.37 (Fig. 6).
Experimental verification based on the optimization results
The response surface analysis identified the optimal conditions for PHB production: an inoculum size of 1.74, an (NH₄)₂HPO₄ concentration of 1.0 g/L, and a pH of 6.37, resulting in a maximum PHB yield of 5.94 g/L. To validate these conditions, fermentation trials were conducted three times under the optimized parameters, followed by bacterial harvesting after 72 h to measure PHB production. The close agreement between experimental and predicted results confirms the reliability of the quadratic model in assessing the combined effects of multiple factors on PHB biosynthesis. The 3D response surface plot displayed a convex shape, emphasizing the interplay between inoculum size, pH, and (NH₄)₂HPO₄ concentration in optimizing PHB yield (Fig. 3). The observed trends suggest that these parameters significantly influence microbial metabolism, nutrient assimilation, and polymer accumulation. The strong correlation between the model's predictions and actual results highlights the effectiveness of the RSM model in optimizing PHB production. These findings reinforce the model’s predictive accuracy and provide a basis for scaling up PHB biosynthesis using cost-efficient and renewable feedstocks.
Characterization of PHB
GC–MS analysis
The molecular structure of PHB can be effectively measured and described by gas chromatography. For GC analysis, PHB must be depolymerized into acids, diols, or esters [46]. Following methanolysis of the PHB sample, the methyl esters exhibited fragmentation patterns in GCMS, facilitating the identification of the resultant PHB derivatives. Four principal peaks were detected in the biopolymer extract of H. meridiana (Fig. 7), with retention periods of 46.76 min, 46.76 min, 52.94 min, and 52.94 min, respectively. Dimers of ç-hydroxybutyric acid, crotyl ester, and ç-hydroxybutyrate, along with 2-butenoic acid, 1-methyl ethyl ester, tetradecane, hexadecanoic acid, methyl ester, and docosanoic acid, 8,9,13-trihydroxy methyl ester, are included. Table 9 illustrates the primary peaks, confirming the existence of polyhydroxybutyric acid (PHB) in H. meridiana samples. This finding corresponded with Mandragutti, Jarso [7] and Hong, Song [47].
Fourier transform-infrared spectroscopy (FTIR)
The IR spectrum of the PHB compound (KBr, υmax in cm⁻1) displayed characteristic absorption bands at 3436.71 cm⁻1 corresponding to O–H stretching, 2922.65 cm⁻1 for C–H stretching, and a strong band at 1720.54 cm⁻1 indicative of C = O stretching. Additional bands at 1453.52 and 1275.38 cm⁻1 were attributed to methylene bending, as shown in Fig. 8. These results agree with [20] showed absorption bands at 3453 cm−1 (OH stretching), 2980 cm−1 (C-H stretching), 1448 and 1285 cm−1 (methylene bending), and 1736 cm−1 (C = O stretching). Furthermore, the outcomes concur with the latest research by [48], It had the C = O characteristic band, which is the most significant one for PHB isolated from Haloferax mediterranei. We noticed this band at 1720–1740 cm−1. This result aligns with the findings of [49], which present the spectra of three commercial PHB standards. A distinct peak area, corresponding to PHB concentration, is observed within the region of 1728 cm⁻1 to 1744 cm⁻1. Moreover, the results align with Furthermore, the results above correspond with [7] in which B. paraconglomeratum, the carbonyl group was centered at 3019 cm−1, which indicates the presence of longer aliphatic chains. The stretches in 1709 and 1362 cm−1 indicate the C = O, C-H bending or CH3.The obtained IR spectra showed typical ester C-O bonds at 1217 cm.−1.[35]
Nuclear magnetic resonance (NMR)
The 1H-NMR spectrum of the PHB isolated from strain MH 96 (Fig. 9) displayed characteristic signals corresponding to the structure of PHB s. A doublet at 1.33 ppm was assigned to the methyl (–CH₃) group, coupled to a single proton, while a doublet of quadruplets at 2.44 ppm was attributed to the methylene (–CH₂) group adjacent to an asymmetric carbon. Additionally, a signal at 5.21 ppm corresponded to the methine (–CH) group. Since these signals have been previously found in the PHB standards [50], they are similar to our sample, it can be confirmed that the biopolymer was synthesized by H. meridiana is a PHB. The measured chemical shifts and assignments aligned closely with a genuine PHB sample from Aldrich, validating the extracted biopolymer as poly-3-hydroxybutyric acid, further corroborated by the 13C NMR spectrum. Additionally, the 13C NMR spectra (Fig. 10) displayed peaks at 19.72, 40.73, 67.55, and 169.116 ppm, which correspond to the resonances for (–CH₃), (–CH₂–), (–CH–), and (–C–), respectively. The synthesized polymer was verified as PHB using the resonances of the methyl, methylene, methine, ester groups, and carbonyl carbon atoms. This data corroborates with [7] the 1H NMR spectra of B. paraconglomeratum PHB extracts displayed resonances for the hydroxybutyrate side groups: a peak for (-CH3) at 1.224 ppm, a singlet for (-CH-) at 5.163 ppm, and doublets for (CH2) at 2.164 and 2.072 ppm. The 13 C NMR spectra (Fig. 10) exhibited peaks at 19.71, 40.75, 67.63, and 169.43 ppm, corresponding to (CH3), (–CH2–), (–CH–), and (–C–), respectively. The resonances of methyl, methylene, methane, ester groups, and the carbonyl carbon atom validated that the produced polymer was PHB.
X-ray diffraction
X-ray diffraction (XRD) analysis further confirmed the crystalline nature of the polymer. The XRD profile showed well-defined diffraction peaks at 2θ values of 12.976°, 15.042°, 15.940°, 16.535°, 19.606°, 21.620°, 25.015°, and 29.684°, which align with the typical crystalline pattern of PHB (Fig. 11). These results collectively affirm the successful biosynthesis and isolation of PHB by H. meridiana. The results correlate with those reported by [43], which detected analogous peaks in the XRD data for strain L17, corresponding to the (020), (110), (101), (121), and (002) planes, with peak positions at 13.6°, 17.24°, 21.4°, 25.7°, and 30.5°. The XRD pattern of the polymers derived from orange peel closely corresponded with the standard PHB, exhibiting characteristic crystalline peaks of the polymer.
Thermal characterization of the purified polymer
TGA analyses are essential for establishing the processing thresholds of thermoplastic substances, especially for PHB, which possesses a limited processing range [51]. TGA studies are essential for understanding the processing limits of thermoplastic materials like PHB, which has a narrow processing window. The TGA analysis revealed a two-step decomposition process: an initial weight loss between 30 and 100 °C due to water loss, followed by a second phase starting at 276 °C, with complete degradation at 318.9 °C. At this temperature, ester bonds break, producing shorter chain fragments with carboxylic acid and olefinic terminal groups. The decomposition temperature (Td) for PHB from H. meridiana was found to be 293.35 °C, supported by the DTG curve showing a peak weight loss rate at this temperature, indicating good quality PHB.At this temperature, ester bonds break, producing shorter chain fragments with carboxylic acid and olefinic terminal groups. The decomposition temperature (Td) for PHB from H. meridiana was found to be 293.35 °C, supported by the DTG curve showing a peak weight loss rate at this temperature, indicating good quality PHB. (Fig. 12A). At this temperature, the ester bonds were broken, resulting in shorter chain fragments containing carboxylic acid and olefinic terminal groups. [52]. The decomposition temperature (Td) for PHB produced by H. meridiana was determined to be 293.35 °C. This finding is supported by the DTG curve, which indicated a peak weight loss rate at this temperature, suggesting that the PHB produced is of good quality (Fig. 12B). Moreover, these results align closely with reference samples from prior research (Huanget al., 2023).
Subsequent DSC analysis (Fig. 13) indicated that the isolated PHB displayed a melting temperature (Tm) of 182.43 °C. The melting temperature is analogous to PHB derived from alternative sources, including EPPJ and glucose, which exhibited Tm values of 172 °C and 175 °C, respectively. These findings align with traditional PHB, which has a documented Tm of 176 °C [35]. The higher thermal stability of polyhydroxyalkanoates (PHAs) is a crucial aspect of their polymerization processes, signifying the polymer's capacity to endure high temperatures [35].
Research needs and perspectives
Polyhydroxybutyrates (PHBs) are biodegradable, eco-friendly polymers with applications in medicine, packaging, nanotechnology, and agriculture. Despite their potential, commercialization faces challenges due to inefficient production, high costs, and complex extraction processes. The reliance on expensive raw materials and energy-intensive fermentation further limits scalability [54]. Enhancing microbial strains, optimizing fermentation, and improving downstream processing are crucial for making PHBs more cost-effective. While ongoing research aims to reduce production costs and environmental impact, significant hurdles remain for large-scale adoption as a viable alternative to conventional plastics [53]. [54].
Conclusion
This research revealed a promising candidate strain, H. meridiana, capable of producing PHB from orange peel. The synthesized PHB has been characterized as polyester using GC–MS, Fourier transform infrared (FTIR) spectroscopy, NMR spectroscopy, X-ray diffraction, and thermal analysis (DSC and TGA). The considerable production of PHB indicates that orange peel is a significant waste byproduct for research and development in bioplastics. After doing single-factor optimization and response surface optimization, the yield of PHB rose to 5.94 g/L.
Data availability
Data availability statement: the datasets analyzed during the current study are available in the NCBI GenBank database repository with the accession number of PP826284, https://www.ncbi.nlm.nih.gov/nuccore/PP826284.
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Acknowledgements
The authors express their deep gratitude to the Faculty of Science (Boys), Al-Azhar University, Cairo, Egypt, for providing essential research facilities. They also acknowledge the support and resources available at the National Research Centre, Cairo, Egypt.
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Open access funding provided by The Science, Technology & Innovation Funding Authority (STDF) in cooperation with The Egyptian Knowledge Bank (EKB).
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Authors'contributions: Mahmoud H. Hendy: Methodology, Software, Validation, Writing original draft, Writing review and editing; Amr M. Shehabeldine: Conceptualization, Methodology, Supervision, Writing review and editing; HH El-Sheikh: Supervision, Writing review and editing; Amr H. Hashem: Methodology, Supervision; AF El-Sayed: Conceptualization, Methodology, Supervision, Writing review and editing;
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Hendy, M.H., Shehabeldine, A.M., Hashem, A.H. et al. Optimization and characterization of polyhydroxybutyrate produced by Halomonas meridiana using orange peel waste. BMC Microbiol 25, 304 (2025). https://doiorg.publicaciones.saludcastillayleon.es/10.1186/s12866-025-04007-2
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DOI: https://doiorg.publicaciones.saludcastillayleon.es/10.1186/s12866-025-04007-2