Fig. 4

Molecular Dynamics (MD) simulation analysis of ZINC393032 (blue) and ZINC616394 (green). (A) Root Mean Square Deviation (RMSD) of the protein-ligand complexes over 300 ns. (B) Root Mean Square Fluctuation (RMSF) of protein residues in complex with the ligands, along with the apoprotein (black) for comparison. (C) Number of hydrogen bonds formed between the ligands and the protein during the simulation. The results provide insights into the stability, flexibility, and interaction profiles of the ligand-bound systems