Table 2 Mobile genetic elements associated with antibiotic resistance genes in K. pneumoniae isolates
From: Drug resistant Klebsiella pneumoniae from patients and hospital effluent: a correlation?
SAMPLE ID | MLST | CONTIGS | SYNTENY OF RESISTANCE GENES AND MGEs | PLASMID/CHROMOSOMAL SEQUENCE WITH CLOSEST NUCLEOTIDE HOMOLOGY (ACCESSION #) |
|---|---|---|---|---|
CKP1 | ST348 | 4 | blaSHV−110:blaSHV−11::IS3 | Klebsiella pneumoniae strain Kp_2016 − 319 chromosome (CP085101.1) (99.58%) |
41 | IS1::DfrA14:Intl1 | Klebsiella pneumoniae strain 1050 plasmid pKp1050-4 (CP023420.1) (100%) | ||
44 | ISEcp1: blaCTX-M-15:Tn3 | Klebsiella pneumoniae strainUHD-33_plasmid pESBL-PH-33 (CP121138.1) (100%) | ||
47 | QnrB1:IS3000:Tn3 | Klebsiella pneumoniae isolates 307 plasmid: P1 (OW48947.1) (100%) | ||
48 | blaTEM−206:blaTEM−141:blaTEM−1B:blaTEM−214:IS91:APH(6)-Id:APH(3’’)-Ib:sul2 | Klebsiella pneumoniae isolates 307 plasmid P:1 (OW48947.1) (100%) | ||
CKP2 | ST17 | 30 | Tn3:blaCTX−M−15:ISEcp1:blaTEM−1B:AAC(3)-IIa:ISE3:ISKpn11:ISKpn12:ISKpn26:IS1:ISNCY | Klebsiella pneumoniae strain KpST17-2117 plasmid pKp2117_1 (CP075592.1) |
41 | Tn3:IS3000:blaOXA−181::ISKpn19:QnrS1 | Klebsiella pneumoniae strain RIMV _C019688 plasmid pRIVM_C019688_3 (CP068958.1) (100%) | ||
42 | IS110:ISPa38:APH(6)-Id;APH(3’’)-Ib:Sul2 | Klebsiella pneumoniae strain 1,613,015,451 plasmid p3-1613015451 (CP083069.1) (99%) | ||
43 | ISEc33:blaNDM−1:IS91 | Klebsiella pneumoniae C105 plasmid pC105-NDM1-IncHI3 (MN240794.1) (99%) | ||
44 | Mph(E):msr(E): ISEc29:IS5:ISCR1 | Klebsiella pneumoniae strain BA10835 plasmid pvirulence_VBA10835 (CP053766.1) (99%) | ||
74 | Sul1:QacEΔ1 | Klebsiella pneumoniae E196 plasmid pE196_IMP6 DNA (AP019405.1) (100%) | ||
CKP4 | ST152 | 56 | blaTEM−1B:IS91:APH(6)-Id:APH(3’’)-Ib:sul2 | Klebsiella pneumoniae isolate 392 plasmid: P1 (OW968235.1) (100%) |
59 | QnrB6:ISCR1 | Klebsiella pneumoniae strain KP32558 plasmid pKP32558-2-mcr8 (CP076032.1) (100%) | ||
60 | Tn3:blaCTX−M−15 | Klebsiella pneumoniae isolate 307 plasmid: P1 (OW848947.1) (100%) | ||
61 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
62 | MphR(A)::Mph(A) | Klebsiella pneumoniae isolate 11 plasmid: P1 (OW969612.1) (100%) | ||
66 | IS3:AAC(3)-IIa | Klebsiella pneumoniae isolate 307 plasmid: P1 (OW848947.1) (100%) | ||
72 | IS1:catA1 | Klebsiella pneumoniae isolate 11 plasmid: P1 (OW969612.1) (100%) | ||
79 | Sul1:QacEΔ1 | Klebsiella pneumoniae E196 plasmid pE196_IMP6 DNA (AP019405.1) (100%) | ||
CKP5 | ST17 | 27 | IS1:::Sul1:QacE:AadA16:DfrA27:Arr-3:AAC(6’)-Ib-cr:IntI1 | Klebsiella pneumoniae isolate 307 plasmid: P2 (OW849061.1) (99.99%) |
28 | ISKpn12:ISKpn11:IS3:AAC(3)-IIa:blaTEM-1:ISEcp1:blaCTX-M-15:Tn3 | Klebsiella pneumoniae strain KpST17-2177 plasmid pKp2177_1 (CP075592.1) (100%) | ||
CKP8 | ST17 | 18 | IS1:IS3:IS1 × 2:ISKpn25:ISL3:ISNCY: ISKpn26:ISKpn12:ISKpn11:AAC(3)-IIa:blaTEM-1:ISEcp1:blaCTX-M-15:Tn3 | Klebsiella pneumoniae strain KpST17-2177 plasmid pKp2177_1 (CP075592.1) (100%) |
39 | Tn3:IS3000:blaOXA-48:EreA: ISKpn19 | Klebsiella pneumoniae strain RIVM_C019688 plasmid pRIVM_C019688_3 (CP068958.1) (100%) | ||
40 | ISAba125:ISEc33:blaNDM-1:IS91 | Klebsiella pneumoniae strain CDC 0106 plasmid unitig_1 (CP022612.1) (100%) | ||
41 | ISpa38:APH(6)-Id:APH(3’’)-Ib:Sul2 | Klebsiella pneumoniae strain MAKM-3381 plasmid (CP129540.1) (99.98%) | ||
42 | Mph(E):Msr(E):ISEc29:IS5:ISCR1 | Klebsiella pneumoniae strain BA10835 plasmid pvirulence_VBA10835 (CP053766.1) (99%) | ||
43 | AadA16:dfrA27:Arr-3:AAC(6’)-Ib-cr:IntI1:Tn3:IS4321 | Klebsiella pneumoniae KP17 plasmid pKP17_NDM1 DNA (LC521852.1) (98.85%) | ||
72 | Sul1:QacEΔ1 | Klebsiella pneumoniae E196 plasmid pE196_IMP6 DNA (AP019405.1) (100%) | ||
CKP10 | ST17 | 26 | BlaCTX-M-5:ISEcp1:blaTEM-1:AAC(3)-IIe:IS3:ISKpn11:ISKpn12:ISKpn26:IS1:ISNCY: | Â |
33 | ISpa38:APH(6)-Id:APH(3’’)-Ib:Sul2 | Klebsiella pneumoniae strain MAKM-3381 plasmid (CP129540.1) (99.98%) | ||
35 | IS1:::Sul1:QacEΔ1 | Klebsiella pneumoniae isolate 307 plasmid: P2 (OW849061.1) (100%) | ||
36 | AadA16:DfrA27:Arr-3:AAC(6’)-Ib-cr:IntI1 | Klebsiella pneumoniae strain HUM7199 plasmid pHUM7199_B (CP093316.1) (100%) | ||
39 | QnrB6:ISCR1 | Klebsiella pneumoniae strain KP32558 plasmid pKP32558-2-mcr8 (CP076032.1) (100%) | ||
SEB1 | ST29 | 40 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
42 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
40 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) | ||
SEB2 | ST29 | 5 | Recombinase:OqxB:OqxA | Klebsiella pneumoniae isolate INF171-sc-2,280,028 chromosome:1 (LR890446.1) (99.93%) |
37 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) | ||
41 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB3 | ST29 | 37 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
39 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB4 | ST29 | 39 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
42 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
39 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) | ||
SEB5 | ST29 | 38 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
40 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB6 | ST29 | 36 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
39 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB7 | ST29 | 38 | IS1B:CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
41 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB8 | ST29 | 38 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
40 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB9 | ST29 | 38 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 512 plasmid: P1 (OW967602.1) (100%) |
40 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) | ||
SEB10 | ST29 | 38 | CatA1:TnAs3 | Klebsiella pneumoniae isolate 307 plasmid: P1 (OW848947.1) (100%) |
39 | TetR(D):Tet(D) | Klebsiella pneumoniae strain S166-1 plasmid pS166-1.1 (CP063946.1) (100%) |