Table 2 Genome characteristics of isolated JS01 APEC
Type | Length (bp) | GC content (%) | Plasmid name | |
|---|---|---|---|---|
Genome | chromosome | 4,815,411 | 50.75 | — |
Plasmid1 | 145,399 | 50.98 | pGSH8M-2–1 | |
Plasmid2 | 91,910 | 47.97 | pATCC10729_02 | |
Plasmid3 | 36,674 | 41.17 | unnamed | |
Number | Total length | Average length | Percentage of genome(%) | |
Gene | 5,107 | 4,517,750 | 885 | 88.77 |
CDS | 4,760 | 4,449,855 | 935 | 87.43 |
tRNA | 92 | 7,225 | 79 | 0.14 |
23S rRNA | 7 | 20,321 | 2,903 | 0.4 |
16S rRNA | 7 | 10,766 | 1,538 | 0.21 |
5S rRNA | 8 | 888 | 111 | 0.02 |
tmRNA | 1 | 363 | 363 | 0.01 |
MiscRNA | 232 | 28,332 | 122 | 0.56 |
Pseudo gene | 1,605 | 356,698 | 222.24 | 7.01 |