BMC Microbiology

Table 1 The reads counts and fastqc_percent_duplicates of RNA-sequencing data of liver in mice during the acute and chronic stages of infection

From: Interaction between the liver transcriptome and gut microbiota in mice during Toxoplasma gondii infection as identified by integrated transcriptomic and microbiome analysis

Sample code	Raw data		Clean data
Sample code	Reads_counts	Fastqc_percent_duplicates	Reads_counts	Fastqc_percent_duplicates
N1_1	53,076,040	67.16788073	52,969,150	67.12506486
N1_2	53,076,040	66.265333	52,969,150	66.31393594
N2_1	42,070,728	67.54287021	41,984,581	67.50747343
N2_2	42,070,728	67.56886414	41,984,581	67.58161674
N3_1	50,945,698	67.8750407	50,827,811	67.82774433
N3_2	50,945,698	66.97479878	50,827,811	66.99214804
AI1_1	41,736,056	68.02723986	41,663,445	67.98976438
AI1_2	41,736,056	67.72978235	41,663,445	67.74803661
AI2_1	52,534,720	68.22310001	52,418,390	68.19483423
AI2_2	52,534,720	67.15723616	52,418,390	67.25143365
AI3_1	41,777,085	76.0276285	41,620,931	75.92866582
AI3_2	41,777,085	75.78176237	41,620,931	75.78294031
CI1_1	45,525,320	68.72449952	45,449,060	68.67379654
CI1_2	45,525,320	68.51496535	45,449,060	68.52965228
CI2_1	49,615,943	67.21503845	49,500,469	67.14813611
CI2_2	49,615,943	66.10221004	49,500,469	66.09516656
CI3_1	52,722,104	71.33041885	52,648,122	71.3075909
CI3_2	52,722,104	69.54244253	52,648,122	69.58929119
Total	860,007,388		858,163,918

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ISSN: 1471-2180

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