Table 3 Phylogenetic analysis per sequence type including quinolone-resistant Escherichia coli isolates from both broiler and humans
From: Comparative genomics of quinolone-resistant Escherichia coli from broilers and humans in Norway
Sequence type (ST) | Number of isolates per species (broiler / human) | Average genome coverage* | SNP range | Median SNP distance | Mean SNP distance |
|---|---|---|---|---|---|
ST10 | 12 / 4 | 75.8% | 9–1498 | 512.5 | 440.0 |
ST117 | 3 / 2 | 85.4% | 37–630 | 526 | 505.7 |
ST131 | 4 / 22 | 80.8% | 4–534 | 231 | 265.9 |
ST155 | 4 / 1 | 83.6% | 21–588 | 520 | 387.9 |
ST162 | 8 / 4 | 89.3% | 5–605 | 538 | 324.1 |
ST453 | 8 / 1 | 83.6% | 3–359 | 38 | 99.8 |