Skip to main content
Fig. 6 | BMC Microbiology

Fig. 6

From: Towards unlocking the biocontrol potential of Pichia kudriavzevii for plant fungal diseases: in vitro and in vivo assessments with candidate secreted protein prediction

Fig. 6

The workflow for predicting candidate-secreted proteins of P. kudriavzevii. A The total protein sequences of P. kudriavzevii strains CBS573, SD108, and SD129 were collected from the GenBank database. B Effector prediction pipeline involved signal peptide and C transmembrane domains prediction using SignalP and TMHMM-2.0, receptively. D The presence of signal peptides and absence of transmembrane domains of all filtrated proteins were validated using Phobius. E The number of shared and unique potential secretion proteins were identified for each strain. In common candidate-secreted proteins were functionally annotated using the Blast2GO suite

Back to article page

BMC Microbiology

ISSN: 1471-2180

Contact us